Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttccagttgttactcttcttttaaaccgctttgaaataccgaacttgttcttgagctttacatagtaatgctgatgcaagatcttggtttgtttctggctgaagTCGATTCACGTAATGGATTACTCCTTACTAGTCGGGGTAGATGAGGAAAGAAACGAGCTGGTTCTAGGAATTATCGATTTCATGAGGCAATACACTTGGG

Basic information

species Arabidopsis thaliana
transcript AT4G33240.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164021445|gb|ES156955.1|ES156955
EST:     CTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCT                         TCGATTCACGTAATGGATTACTCCTTACTAGTCGGGGTAGATGAGGAAAGA
genomic: CTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCTgtaagtttcc ... ctggctgaagTCGATTCACGTAATGGATTACTCCTTACTAGTCGGGGTAGATGAGGAAAGA
EST: gi|125186812|gb|EL201766.1|EL201766
EST:     CAAAACGGCTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCT                         TCGATTCACGTAATGGATTACTCCTTA
genomic: CAAAACGGCTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCTgtaagtttcc ... ctggctgaagTCGATTCACGTAATGGATTACTCCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgagctttacatagtaatgctgatgcaagatcttggtttgtttctggctgaagTCGATTCACGTAATGGATTACTCCTTACTAGTCGGGGTAGATGAGGAAAGAAACGAGCTGGTTCTAGGAATTATCGATTTCATGAGGCAATACACTTGGG
                   tgctgat  putative branch site (score: 3)
                                      tttgtttct  putative PPT
       tttacata  TA-rich tract