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gtatgaatcctagagttaatttcctgatagtatatatgatgaaaatgaatatatatatatactcagttcctttctcttttctatgtcttttacagTTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTCCAATAGGGTATTCAGATTCTTCAAGTCCAGCTGCAGATTCCATTGGAC
species | Arabidopsis thaliana |
transcript | AT4G32630.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAA TTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTEST: gi|116405919|gb|EG448511.1|EG448511
genomic: ATCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAAgtatgaatcc ... tcttttacagTTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCT
EST: ATCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAA TTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTEST: gi|116405914|gb|EG448506.1|EG448506
genomic: ATCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAAgtatgaatcc ... tcttttacagTTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCT
EST: ATCCCTTTGATTTTAGCTATGATGATACAGCTCCAAACCAAACACCACAA TTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTEST: gi|116405910|gb|EG448502.1|EG448502
genomic: ATCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAAgtatgaatcc ... tcttttacagTTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCT
EST: ATCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAA TTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCT
genomic: ATCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAAgtatgaatcc ... tcttttacagTTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCT
gaaaatgaatatatatatatactcagttcctttctcttttctatgtcttttacagTTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTCCAATAGGGTATTCAGATTCTTCAAGTCCAGCTGCAGATTCCATTGGAC
ctcagttcctttctct CT-rich tract
aatatatatatatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatcctagagttaatttcctgatagtatatatgatgaaaatgaatatatatatatactcagttcctttctcttttctatgtcttttacagTTTCCTACTATGGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTCCAATAGGGTATTCAGATTCTTCAAGTCCAGCTGCAGATTCCATTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT