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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttttttggtcactcaaagactttctaaatttacgtggtttattatttttcaaattgcagctggaccaggcttacaaatttcccatacatatatgacacagaccgtttgattgtttcatgtctccagGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTG

Basic information

species Arabidopsis thaliana
transcript AT4G27650.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27650.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA20G36200.1 (Glycine max), 3'ss of exon 10
gttttttttttggtcactcaaagactttctaaatttacgtggtttattatttttcaaattgcagctggacca-ggcttacaaatttcccatacatatatgacacagaccgtttgattgtttcatgtctccagGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTG
                   ||| | ||  | |||      | ||| |   |    || |     | |||    ||   | | || |     |    |||     | | |  |     ||||| ||| || ||||||||||||| || |||||||| ||||| |||||| |||||||  || ||||||||||||| ||||||||||| || ||  | ||||| ||||  || |
-------------------aaaaatttctttaat------gatttgtatgtgcataagtgcggacaggattttggtacagagatgtttataatgcttatattttaaatctct-----gtttc-tgtttc-agGATCAGTTTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAG

upper sequence: AT4G27650.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA10G31310.1 (Glycine max), 3'ss of exon 10
gttttttttttggtcactcaaagactttctaaatttacgtggtttattatttttcaaattgcagctgga--ccaggcttacaaatttcccatacatatatgacacagaccgtttgattgtttcatgtctccagGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTG
                                || |      ||| |||  |    || |||||   |      ||  || | || |     |    |||     | | |  | | |   ||  ||| || ||||||||||||| || |||||||| |||||||||||| |||||||  || ||||||||||||| || ||||| || || ||  | ||||| ||||  || |
-------------------------------tatctttaatattt-ttacgtacgtaagtgcagacaggattttggtatagagatgtttataatgcttatattttaaatctctggttctgtttctgtttc-agGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGACCTATTATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAG

upper sequence: AT4G27650.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 3'ss of exon 10
gttttttttttggtcactcaaagactttctaaatttacgtggtttattatttttcaaattgcagctggaccaggcttacaaatttcccatacatatatgacacagaccgtttgattgtttcatgt-ctccagGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTG
                           | ||  ||          |  || |  |       |  |     |    ||||   ||   || | ||| |||     |  |||| ||| ||   | |  | |||||||| |||||||| || ||||||||||| |||||| ||||||| |||||| |||||||||||||||| ||||| |||||  | ||||| ||   |||||
---------------------------tatagtttcttaccaaagaccatgtccctctccataaatattttaa---tacaggattat-attcttatttgatctgaatggttt-attattatgtatgtttcagGATCAATTTCATCGTCATTTATTGTTGGAGGCAGAACGAAGACAGCTGAGATCTATTATTGAGAATAAGTCACGCATAATTCTTGTGCATACGTCCTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaaatttcccatacatatatgacacagaccgtttgattgtttcatgtctccagGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTG
                                              tgtctcc  CT-rich tract
            atacatatat  TA-rich tract