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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactgttatactgcattgcataagaactcagttatttccactgaaaaatatgatacatttcatgttcatgctcatgtggttaaaatcttttgcagGTTCTGTTTCGAGAATGGCCTAATGTCCTCTCACTCTTGGGTGGTCTGATTGTGATCAAAACACTGATTATAACCGCAATCGGTCCCCGAGTTGGCCTCA

Basic information

species Arabidopsis thaliana
transcript AT4G04850.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 10
---gtaaactgttatactgcattgcataagaactcagttatttccactgaaaaatatg-atacatttcatg-ttcatgctcatgtggttaaaatcttttgcagGTTCTGTTTCGAGAATGGCCTAATGTCCTCTCACTCTTGGGTGGTCTGATTGTGATCAAAACACTGATTATAACCGCAATCGGTCCCCGAGTTGGCCTCA
   ||||  | | |    |||||||        |  |||| ||  ||  || | | |  |||   |   || | |||  | |  |  ||   ||  | || || ||||  | || || ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||||| || |||||||| || ||  |||| ||  | |
taagtaatatttaaaggggcattgctgtgttttttcgttagtta-acaaaagattgtttatatgctcattgatccatcttgacct--tttgcatgatatgtagCTTCTCATCCGGGAGTGGCCTAATGTTCTGTCACTGTTGGGGGGTCTTATTGTAATCAAGACACTGATAATCACCGCAATTGGGCCTAGAGTCGGGTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaaaatatgatacatttcatgttcatgctcatgtggttaaaatcttttgcagGTTCTGTTTCGAGAATGGCCTAATGTCCTCTCACTCTTGGGTGGTCTGATTGTGATCAAAACACTGATTATAACCGCAATCGGTCCCCGAGTTGGCCTCA
                                             tcttttgc  CT-rich tract
     aaatatgatacattt  TA-rich tract