1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcagtttcttctacgttatctagatttattatttctgtttagttcgatttttgtcactgtttggatcggttttacgagccccagaaatggcaaaatgttgattattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAACCTGAAAGGTTACTTGCAAGACGCTTATATTCATCCGGTTTTTAAAGGCG
species | Arabidopsis thaliana |
transcript | AT4G04340.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAG GAAGCTATGATGAAAGATACATTGGAAAGAGCEST: gi|125097305|gb|EL153808.1|EL153808
genomic: GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGC
EST: CCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAG GAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAACEST: gi|125233478|gb|EL247563.1|EL247563
genomic: CCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAAC
EST: TCCGTTACCCCTTACAG GAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAACEST: gi|124928974|gb|EL006565.1|EL006565
genomic: TCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAAC
EST: GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAG GAAGCTATGATGAAAGATACATTGGA
genomic: GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGA
tgtttggatcggttttacgagccccagaaatggcaaaatgttgattattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAACCTGAAAGGTTACTTGCAAGACGCTTATATTCATCCGGTTTTTAAAGGCG
tgttgat putative branch site (score: 4)
ttatttt CT-rich tract
aaaatgttgattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttcttctacgttatctagatttattatttctgtttagttcgatttttgtcactgtttggatcggttttacgagccccagaaatggcaaaatgttgattattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAACCTGAAAGGTTACTTGCAAGACGCTTATATTCATCCGGTTTTTAAAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA