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gtaatgaattagcctaaaacatttgttaataactaattagcgtcaacataatcatattctcattctcattgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTACGCATTAGGTTACGGTGCTGGATCACTTCTCCAGAGCGGAAAGACCGGA
species | Arabidopsis thaliana |
transcript | AT4G04040.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCACACTTCTTTGG GTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTAEST: gi|125308426|gb|EL322511.1|EL322511
genomic: TCACACTTCTTTGGgtaatgaatt ... tgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTA
EST: ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGG GTATGAAGGAAGATGCGGCTTACCTACAAAEST: gi|124846532|gb|EH930969.1|EH930969
genomic: ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGGgtaatgaatt ... tgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAA
EST: ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGG GTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTA
genomic: ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGGgtaatgaatt ... tgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTA
gttaataactaattagcgtcaacataatcatattctcattctcattgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTACGCATTAGGTTACGGTGCTGGATCACTTCTCCAGAGCGGAAAGACCGGA
ttctcattctcatt CT-rich tract
aacataatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaattagcctaaaacatttgttaataactaattagcgtcaacataatcatattctcattctcattgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTACGCATTAGGTTACGGTGCTGGATCACTTCTCCAGAGCGGAAAGACCGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA