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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgttttctctttttcggtttcacataatttcatgacagaaatatgaagaactgttctaacgtaaaacgttgtcttgatggcttgtcaatatttctgcagGGTCTTCTTCCCTCAGGACTTAGATTCTGCTGCAGATGCTCTGCTTTCCGGGCACCACGAGACCGACTAGCATTAATCGTGACAGAAATTTGCAGTTTAC

Basic information

species Arabidopsis thaliana
transcript AT3G52390.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083780|gb|DR379539.1|DR379539
EST:     CTTGGCGATCTAAATCAAGTTAGCTCAACCTTGTACCACAACACTTGCAG                         GGTCTTCTTCCCTCAGGACTTAGATTCTGCTGCAGATGCTCTGCTTTCCGG
genomic: CTTGGCGATCTAAATCAAGTTAGCTCAACCTTGTACCACAACACTTGCAGgcatgttttc ... atttctgcagGGTCTTCTTCCCTCAGGACTTAGATTCTGCTGCAGATGCTCTGCTTTCCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagaactgttctaacgtaaaacgttgtcttgatggcttgtcaatatttctgcagGGTCTTCTTCCCTCAGGACTTAGATTCTGCTGCAGATGCTCTGCTTTCCGGGCACCACGAGACCGACTAGCATTAATCGTGACAGAAATTTGCAGTTTAC
                                            tatttct  CT-rich tract
                                        tcaatattt  TA-rich tract