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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttcttcttaactgttaagcatagtgtctgatcattttccaacaaccactacaatttctgaaatgcagGAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACACAATGAGGCCGAACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATT

Basic information

species Arabidopsis thaliana
transcript AT3G52180.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084027|gb|DR379786.1|DR379786
EST:     TAACACTGGACAAGGGAACAGGATTCTGGATCCTAAAAAGAGAACTGCCT                         GAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACACAAT
genomic: TAACACTGGACAAGGGAACAGGATTCTGGATCCTAAAGAGAGAACTGCCTgtgagttttc ... tgaaatgcagGAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACACAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaagcatagtgtctgatcattttccaacaaccactacaatttctgaaatgcagGAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACACAATGAGGCCGAACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATT
            gtctgat  putative branch site (score: 4)
                                         tttct  putative PPT
                 atcatttt  TA-rich tract