1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttgagcttgatcatccttctcataaacgtttccgaatatctcaaactttaatcataagattcctaaaacaattctgttgaatttcagGGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAG
species | Arabidopsis thaliana |
transcript | AT3G45300.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAG GGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAGGTCATACEST: gi|125052813|gb|EL124328.1|EL124328
genomic: GCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAGgttgagcttg ... tgaatttcagGGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAGGTCATAC
EST: GCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAG GGTAAAGTTGCTGATATGTACACTGCATTACAEST: gi|86079436|gb|DR375193.1|DR375193
genomic: GCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAGgttgagcttg ... tgaatttcagGGTAAAGTTGCTGATATGTACACTGCATTACA
EST: GCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAG GGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAG
genomic: GCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAGgttgagcttg ... tgaatttcagGGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAG
cgaatatctcaaactttaatcataagattcctaaaacaattctgttgaatttcagGGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAG
tcctaaa putative branch site (score: 2)
ttctgtt putative PPT
aaactttaatcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgagcttgatcatccttctcataaacgtttccgaatatctcaaactttaatcataagattcctaaaacaattctgttgaatttcagGGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT