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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G26440.4
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 12
----------------------------------------------gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaac-----actttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG
                                               |||| |||   | |   |      | |||   ||  ||  | | ||  |  | |  ||  |     | |||     ||| ||      ||    | | |||||||||||||||||||||| ||||| |||||||| |||||  |||| |||   ||||| ||  |||| |  |||
gtgagtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 12
-------------------------------------------------------------------------gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaac-agCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG
                                                                         |  ||   | | | | || |     | |||   | | |  | |||| |   |    ||| ||   || ||  |   |||  |    |  | |   ||||||| |||||||||||||| ||||| |||||||| |||||  |||| |||    |||| ||  |||| |  |||
gtgagtccattctcactcctttgtcaagtaaaatccaatttggcttgaccagttgaccttaggataagcacatgccaatgaaaagaaaaaagtggaaaataaaaatgca-atctatacatactat----gaagctttaaacaatgatcctttttttcccccctgatttagCCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
--gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG
    | || ||    | |    |  | | |  | | ||| ||||        |  | |   |  |    | |||  ||  |  |  ||    ||||||||||| |||||||| ||||| || || ||||||||||||||| |||||||||   |||| ||  | || | ||||
gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatgatcatattggaac--ttcctcgtctttg---aaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
--gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG
    | || ||    | |    |  | |    |   ||| ||||        |  | |   |  |    | |||  ||  |  |  ||    ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||   |||| ||  | || | ||||
gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaac--ttcctcgtctttg---aaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
--gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG
    | || ||    | |    |  | |    |   ||| ||||        |  | |   |  |    | |||     ||  |  |     ||||||||||| |||||||| ||||| ||||| ||||||||| ||||| |||||||||   |||| ||  | || | ||||
gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaac-----ttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG
                                  ttttaat  putative branch site (score: 3)
                               actttttaatgattca  TA-rich tract