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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaattttatataatcctcctctacttgtaagagcacaatgtcataatattctgctactgagatattttctttgatctactagGTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCACGGATACTGCTGATGATTTTACCGAAATTGTATCGAAAATAGCGCATTTGGATCACGAAA

Basic information

species Arabidopsis thaliana
transcript AT3G14350.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055031|gb|DR350788.1|DR350788
EST:     GTGAAGGAACATTTGAAAGAGTATACAGAGCTCAGTTTGAAGATGGAAAG                         GTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCACGGATACTGCT
genomic: GTGAAGGAACATTTGGAAGAGTATACAGAGCTCAGTTTGAAGATGGAAAGgtatttaatt ... gatctactagGTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCACGGATACTGCT
EST: gi|163975865|gb|ES051153.1|ES051153
EST:     GTGAAGGAACATTTGGAAGAGTATACAGAGCTCAGTTTGAAGATGGAAAG                         GTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCA
genomic: GTGAAGGAACATTTGGAAGAGTATACAGAGCTCAGTTTGAAGATGGAAAGgtatttaatt ... gatctactagGTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagagcacaatgtcataatattctgctactgagatattttctttgatctactagGTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCACGGATACTGCTGATGATTTTACCGAAATTGTATCGAAAATAGCGCATTTGGATCACGAAA
                                         ctttgat  putative branch site (score: 5)
                                     ttttctttg  CT-rich tract
         aatgtcataatatt  TA-rich tract