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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttattcttctgcaaaccatttactcttcactactctttgaaaaggtttattagcaataactatatttttcgtgtttgcagTTGGGTGATGTGATGGATTATTCATTGCTAGTAGGCGTGGATGAAGAAAAGAACGAGCTAGTTCTCGGGATTATCGACTTCTTGAGGCAGTACACATGGG

Basic information

species Arabidopsis thaliana
transcript AT3G14270.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14270.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 15
------------gtgagttttattcttctgcaaaccatt---tactcttcactactctttgaaaaggtttattagcaataactatatt--------------tttcgtgtttgcagTTGGGTGATGTGATGGATTATTCATTGCTAGTAGGCGTGGATGAAGAAAAGAACGAGCTAGTTCTCGGGATTATCGACTTCTTGAGGCAGTACACATGGG
                 || | ||  ||   ||  || |   ||  ||   | | | ||  |  || || | |     || | || ||              ||  |   || ||||  | ||||||||||||||| ||||| || || || ||||| || || ||| | ||||||||||||||||| ||||||||| |||||||||| |||||||
gtaagttttgaaaccgattgtgttgctcccaaagtcaatatgtaggctgttccaattttcaagtagattaaatgcttgtatccattttaatgtctctttacattatgctattacagTCTGTTGATGTGATGGATTACTCATTACTGGTTGGGGTGGACGAGGAGAAGCATGAGCTAGTTCTCGGGATCATCGACTTCATGAGGCAGTATACATGGG

upper sequence: AT3G14270.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: EFJ20887 (Selaginella moellendorffii), 3'ss of exon 10
gtgagttttattcttctgcaaaccatttactcttcactactctttgaaaaggtttattagcaataactatatttttcgtgttt-gcagTTGGGTGATGTGATGGATTATTCATTGCTAGTAGGCGTGGATGAAGAAAAGAACGAGCTAGTTCTCGGGATTATCGACTTCTTGAGGCAGTACACATGGG
                 | || | ||    |||      ||||||        || || ||  | ||  | || | |  |||| | ||      ||||| ||||| || ||  | || || ||  | || ||||||      ||||| |||||||||||||| |||||| || |||| ||||||||||
-----------------gtaagcaatggtttctctctctctcttttttctt-cttcttcgcgctcacacttttatactggttttgtagAACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGAGGGGAGCTTGTTCTCGGGATTATTGACTTCATGCGGCAATACACATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactactctttgaaaaggtttattagcaataactatatttttcgtgtttgcagTTGGGTGATGTGATGGATTATTCATTGCTAGTAGGCGTGGATGAAGAAAAGAACGAGCTAGTTCTCGGGATTATCGACTTCTTGAGGCAGTACACATGGG
                            caataac  putative branch site (score: 2)
                                       tttttcgt  putative PPT
                    tttattagcaataact  TA-rich tract