1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtattttgtttgatgttcaaacttgataaagtgttaactgtgtgtgtgtttttactaattatgggtcgttgggtctgatcagGAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGTCAGCTGCTGCACCACCTCAATCTCCAATCGCAGATGCCTCATTCTACTACCCTG
species | Arabidopsis thaliana |
transcript | AT3G14010.4 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGAATCCGAATGCAAAG GAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGTCAGCTEST: gi|124753318|gb|EH843448.1|EH843448
genomic: CTGAATCCGAATGCAAAGgtattttgtt ... gtctgatcagGAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGTCAGCT
EST: CCGAATGCAAAG GAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGTCAGCTEST: gi|125170077|gb|EL193752.1|EL193752
genomic: CCGAATGCAAAGgtattttgtt ... gtctgatcagGAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGTCAGCT
EST: TTGGTTCTATGGCCTCATCAGAAAAGTCCACACTGAATCCGAATGCAAAG GAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGT
genomic: TTGGTTCTATGGCCTCATCAGAAAAGTCCACACTGAATCCGAATGCAAAGgtattttgtt ... gtctgatcagGAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGT
aaagtgttaactgtgtgtgtgtttttactaattatgggtcgttgggtctgatcagGAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGTCAGCTGCTGCACCACCTCAATCTCCAATCGCAGATGCCTCATTCTACTACCCTG
tactaat putative branch site (score: 1)
tgtttttactaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgtttgatgttcaaacttgataaagtgttaactgtgtgtgtgtttttactaattatgggtcgttgggtctgatcagGAATTCAAACTCAATCCAAAGGCTAAGAGTTTCAAACCATTGCAGTCAGCTGCTGCACCACCTCAATCTCCAATCGCAGATGCCTCATTCTACTACCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG