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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttctttcaacaatgtgttgtatagagtttagagtctcattttgaattcaaagtatgcaaagtgtttacttgaaagctctacaacatgaccaagcttgccctatagttgatctccaactaaagcattctaggtgacgatccactgtttcatttttggcatataagCTTGCAGCAGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTTGCATTTTTATTTGGCATTGATGATCATTGGGGTCCACTGCAACTCTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G11620.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19743356|gb|AU228709.1|AU228709
EST:     ATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAG                         CTTGCAGCAGAGCCAGATT-GGATTTCATGAGAAAAAACCAGAGCAAGCTT
genomic: ATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGgtactcttct ... ggcatataagCTTGCAGCAGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTT
EST: gi|86084144|gb|DR379903.1|DR379903
EST:     ATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAG                         CTTGCAGCAGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTT
genomic: ATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGgtactcttct ... ggcatataagCTTGCAGCAGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctccaactaaagcattctaggtgacgatccactgtttcatttttggcatataagCTTGCAGCAGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTTGCATTTTTATTTGGCATTGATGATCATTGGGGTCCACTGCAACTCTTTG
     aactaaa  putative branch site (score: 2)
                                   tttcattttt  TA-rich tract