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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtccactttacctgcaaatctctatacaaccactcttctaagaaccagtccttacttgtgtacctcgttttgcttttctttcagTGTTTATATCTGTCTCCGGAACATCACCCAGTCTTTCCGCGGCTACAGTTTGACCCTTCTGGC

Basic information

species Arabidopsis thaliana
transcript AT3G06550.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124823291|gb|EH908157.1|EH908157
EST:     AAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAAC                         TGTTTATATCTGTCTCCGG
genomic: AAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACgtagtccact ... tttctttcagTGTTTATATCTGTCTCCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactcttctaagaaccagtccttacttgtgtacctcgttttgcttttctttcagTGTTTATATCTGTCTCCGGAACATCACCCAGTCTTTCCGCGGCTACAGTTTGACCCTTCTGGC
                   tccttac  putative branch site (score: 2)
                               tacctcgttttgcttt  putative PPT
                                            ttttcttt  TA-rich tract