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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcacctttttaatatcatttaagcttcagattctttcttagatgaaatatactagaccactcatttgccatgatgactacttatatatctgcctttggatagTATACTAGGACGGCGGAGCGAGAAGCAATTTTGATACGACCAATGCCAATCCTGCAAAATACAATGGAATATTTGCTGAGTTTGCTAGACCGACCTTACA

Basic information

species Arabidopsis thaliana
transcript AT3G06290.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06290.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA13G28300.1 (Glycine max), 3'ss of exon 5
gtaagctcacctttttaatatcatttaagcttcagattctttcttagatgaaatatactagaccactcatttgccatgatgactacttatatatctgcctttggatagTATACTAGGACGGCGGAGCGAGAAGCAATTTTGATACGACCAATGCCAATCCTGCAAAATACAATGGAATATTTGCTGAGTTTGCTAGACCGACCTTACA
            ||   |||| | | ||   |    || || |||      |   |||| |     |||  |   ||  | |   | || ||   ||  |   || ||||||||||||| || ||| | ||||| |||||||| || || ||||| ||||||||||| ||||| || ||| |||| | ||||||||| |  |||||  
--------gtgattgccatattactaaatactattgtttttccttctgaacagcttact-gctttttcaagtattat--taatagcataaat-catgattcatgacagTATACTAGGACAGCAGAGAGGGAAGCCATTTTGATCCGGCCTATGCCTATCCTGCAAAAGACAATTGATTATCTGCTCACTTTGCTAGATCAGCCTTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatactagaccactcatttgccatgatgactacttatatatctgcctttggatagTATACTAGGACGGCGGAGCGAGAAGCAATTTTGATACGACCAATGCCAATCCTGCAAAATACAATGGAATATTTGCTGAGTTTGCTAGACCGACCTTACA
                                        tctgccttt  CT-rich tract
                              tacttatatat  TA-rich tract