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gtaagtttcagactgtctttttgccatcaaatatttctatcagacgtctctatacttgcttagcagttgttcttgaacatataaaaactggagtagaattttctgactggttacaaagattaccattcactttaattgataactaagacgcttaagtctctgtgcagGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTAGACCAG
species | Arabidopsis thaliana |
transcript | AT3G03960.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAA GTTATTTGCCCTTAAATATGEST: gi|47831127|gb|CK120811.1|CK120811
genomic: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAAgtaagtttca ... ctctgtgcagGTTATTTGCCCTTAAATATG
EST: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAA GTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTEST: gi|86087399|gb|DR383158.1|DR383158
genomic: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAAgtaagtttca ... ctctgtgcagGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGT
EST: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAA GTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTEST: gi|47828029|gb|CK117713.1|CK117713
genomic: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAAgtaagtttca ... ctctgtgcagGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGT
EST: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAA GTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGT
genomic: GCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTTTTTGCAACCAAgtaagtttca ... ctctgtgcagGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGT
acaaagattaccattcactttaattgataactaagacgcttaagtctctgtgcagGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTAGACCAG
tgataac putative branch site (score: 2)
tctctgt putative PPT
tttaattgataactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcagactgtctttttgccatcaaatatttctatcagacgtctctatacttgcttagcagttgttcttgaacatataaaaactggagtagaattttctgactggttacaaagattaccattcactttaattgataactaagacgcttaagtctctgtgcagGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTAGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC