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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaagactctttttgtactctttttcatgtttcttgtagcttctggattttcggcaatgattttttttttattggaaaatttgccatctcttgtttttgctttgtattgactgttgaccttttccatgcatcattgcagGATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCCCACATGTTGGGATTTGATGATGAAAAGGTGAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT2G44350.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44350.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 3'ss of exon 11
gttagtgaagactctttttgtactctttttcatgtttcttgtagcttctggattttcggca-atgattttttttttattggaaaatttgccatctcttgtttttgctttgtattgactgttgacct--tttccatgcatcattgcagGATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCCCACATGTTGGGATTTGATGATGAAAAGGTGAAAGAG
                                             ||   |    ||   | |||   || |  ||| |   ||||      | || | |   |  | || | | |  |||| |||  | |   ||     ||| ||| | || || |||||  |    || |||   ||| | |||||||||||||||||||||||||| ||||||||||||||||||  |  |||  || |||||
---------------------------------------------tttcagtgcctcattacatggaattgtgcttagtatgaaatc-atagtttcct-tacatagtatggaatcatggttggcctcatctttctgtgcttttgaagGGTATACAAAAATGGACAAATTATACCCAAGGATGACTCTTTGGATTATGGTGCAAATTTTTCACACATGTTGGGATTTGATAGTCCAAAAATGCAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471055|gb|EG513647.1|EG513647
EST:     CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAG                         GATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG
genomic: CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGgttagtgaag ... atcattgcagGATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG
EST: gi|47832067|gb|CK121751.1|CK121751
EST:     CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAG                         GATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG
genomic: CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGgttagtgaag ... atcattgcagGATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG
EST: gi|116453292|gb|EG495884.1|EG495884
EST:     CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAG                         GATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG
genomic: CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGgttagtgaag ... atcattgcagGATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG
EST: gi|301502837|gb|HO208377.1|HO208377
EST:     CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAG                         GATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG
genomic: CTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGgttagtgaag ... atcattgcagGATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctcttgtttttgctttgtattgactgttgaccttttccatgcatcattgcagGATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCCCACATGTTGGGATTTGATGATGAAAAGGTGAAAGAG
      ttgttttt  TA-rich tract