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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctcttgtgttctgcatcgtacaggtaatcatcattattatctcagaaatcattcttgttgtctcctttttcagGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAG

Basic information

species Arabidopsis thaliana
transcript AT2G38840.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
---------------------------------------------------------------------gtatgttctcttgtgttctgca-tcgtacaggtaatcatcattattatc------tcagaaatcattcttgtt---------gtctcctttttcagGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAG
                                                                      | || | | || | ||||  | |   |     ||| |||| ||  ||       || | |||   | || |          |||  |||  |||||| || || || ||||| || |||||||| ||||||||||||||||| ||||||||||||||||| 
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 12
--------------------------------------------------------------------------------------------------------gtatgttctcttgtgttctgcatcgtacaggtaatcatcattattatctcagaaatcattcttgttgtctcctttttcagGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAG
                                                                                                         |    | ||   |  || | |   ||    || ||   | |   || |     || |  ||    |||  |||  |||||| || || || || || || |||||| | |||||||||||||| || ||||||||||||||||| 
gtatggttttccatttgttttaaagcaaatgatctgatggaaggctttgtttactatttaattgcagggaacaaaaatattgatatggtattttatcttctaaaattcaatttccgattatcagtaaaatagtactagtctggaattgaatatgttttataacactaaaagtcaacttcgtcagGTCAATCAAATCCGAGATTCATTGGCTGTTATGGGTGACAACAGTACTGCCTTTAGCTTACCGCAA

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 10
-----------------------------------gtatgttctcttgtgttctgcatcgtacaggtaatcatcattattatctcagaaatcattcttgttgtctcctttttcagGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAG
                                   |||| ||  ||    |||   | |  |    | ||  | | |  ||  |  ||  |||            | ||   ||||||||||||||||||||||| |||||||| |||||||| || || ||||||||||||||||| || 
gttagttttctcctacttacaaccatgttcttgtagtatctttactgcatttccagaacaaagttttgatagtgaatgctaattgtgacttcagGGG-ACAAAAACATTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaggtaatcatcattattatctcagaaatcattcttgttgtctcctttttcagGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAG
                              tcattcttgttgtctc  CT-rich tract
      taatcatcattattat  TA-rich tract