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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcccttttccttcttcatcaattggtcgtttgattctcccttttcttcacctggaaaaagttgattatttctcattttggaacagGTGATTGTCGGATTCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGACTGGTTTGTTCCTCTTCATGGCGTTGC

Basic information

species Arabidopsis thaliana
transcript AT2G38330.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19742531|gb|AU227884.1|AU227884
EST:     AT-GGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATG                         GTGATTGTCGGATTCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACC
genomic: ATGGGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGgtcccttttc ... tttggaacagGTGATTGTCGGATTCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattctcccttttcttcacctggaaaaagttgattatttctcattttggaacagGTGATTGTCGGATTCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGACTGGTTTGTTCCTCTTCATGGCGTTGC
                            agttgat  putative branch site (score: 5)
                                  ttatttctcatttt  CT-rich tract
                        aaaaagttgattattt  TA-rich tract