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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcgactaaccataaaattgtctatcagtaatcaagatccctttcattcaatgatctaagtactgcgcccagatcatagatgtgcttgtaagacttaaaacccgtgcttttctctgtggctttggtacaaatgcagAGACGAGGTCGTGCTGGACGTGTTCAAGCTGGAGTTTGTTATAGGTTGTATCCAAAAGTTATCTATGATGCTTTTCCACAGTATCAGTTACCAGAAATCA

Basic information

species Arabidopsis thaliana
transcript AT2G35920.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35920.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: LOC_Os10g33275.1 (Oryza sativa), 3'ss of exon 12
gtattcgactaaccataaaattgtctatcagtaatcaagatccctttcattcaatgatctaagtactgcgcccagatcatagatgtgcttgtaagacttaaaacccgtgcttttctctgtggctttggtacaa-atgcagAGACGAGGTCGTGCTGGACGTGTTCAAGCTGGAGTTTGTTATAGGTTGTATCCAAAAGTTATCTATGATGCTTTTCCACAGTATCAGTTACCAGAAATCA
                                                                ||||  | ||| | || ||     ||| || |   || |   |   |  |   ||    || | ||    |  ||||| ||||||||||| |||||||||||  |||| | ||| |||||| ||||||| ||||| || ||||||||  | ||||||| ||||||||| |||||  
------------------------------------------------------------gtacactgt-cacagtttatggaaag--ttgaaaaatccaacaatagatgtactaaatggattttggttatgttacacagAGGCGAGGTCGTGCAGGACGTGTTCAGCCTGGTGCTTGCTATAGGCTGTATCCTAAAGTCATTTATGATGCGATGCCACAGTTTCAGTTACCTGAAATTC

upper sequence: AT2G35920.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA10G10180.1 (Glycine max), 3'ss of exon 13
gtattcgactaaccataaaattgtctatcagtaatcaagatccctttcattcaatgatctaagtactgcgcccagatcatagatgtgcttgtaagacttaaaacccgtgcttttctctgtggctttggtacaaatgcagAGACGAGGTCGTGCTGGACGTGTTCAAGCTGGAGTTTGTTATAGGTTGTATCCAAAAGTTATCTATGATGCTTTTCCACAGTATCAGTTACCAGAAATCA
                               | |     |||||  |  | |  |    |    | |   |  |||| | |||         |     ||| |  | |  |  || |  |        |||   | |||||||| ||||||||||| || || ||| |||||||||| |||||||||||||||||| | ||| |||||||  | || || ||||||||| | |||||| 
------------------------------ttgactctaatccccctgctcccctcccttccccatttt-ctaagataaaagac--------agagagtaacatgcattttactcccactaatgaatatactttttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTATCCAAAACTGATCCATGATGCAATGCCTCAATATCAGTTAGCTGAAATCC

upper sequence: AT2G35920.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 14
gtattcgactaaccataaaattgtctatcagtaatcaagatccctttcattcaatgatctaagtactgcgcccagatcatagatgtgctt-gtaagacttaaaacccgtgcttttctctgtggctttggtacaaatgcagAGACGAGGTCGTGCTGGACGTGTTCAAGCTGGAGTTTGTTATAGGTTGTATCCAAAAGTTATCTATGATGCTTTTCCACAGTATCAGTTACCAGAAATCA
                                   |  | ||||   | | |  |   |  | |         | |  | |||    |   |||| |   |  |    | |||||     ||| |    |     | |||||||| ||||||||||| || || ||| |||||||||| |||||||||||||||||| | ||| |||||||  | || || ||||||||| | |||||| 
-----------------------------------cctgctcccccccctccctt--ccccattttcaaagataaaagacagagaaacagagtaacatgcagtattt-tacttttactaatgggtagactttt--ttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTATCCAAAACTGATCCATGATGCAATGCCTCAATATCAGTTAGCTGAAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcttgtaagacttaaaacccgtgcttttctctgtggctttggtacaaatgcagAGACGAGGTCGTGCTGGACGTGTTCAAGCTGGAGTTTGTTATAGGTTGTATCCAAAAGTTATCTATGATGCTTTTCCACAGTATCAGTTACCAGAAATCA
           acttaaaa  TA-rich tract