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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcatcccttcggtttaaattttctcgttcgctgcatgatatgttctgtcattgttctaatcacaaacttggttgtgcttttgtctctcccccttaacagAATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGGCTCGTGGAAAGTTTTTGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G34750.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124948550|gb|EL024289.1|EL024289
EST:     AGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAG                         AATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGG
genomic: AGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAGgcaagcatcc ... cccttaacagAATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtcattgttctaatcacaaacttggttgtgcttttgtctctcccccttaacagAATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGGCTCGTGGAAAGTTTTTGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAG
         ttctaat  putative branch site (score: 2)
                           ttgtgcttttgtctct  putative PPT
         ttctaat  TA-rich tract