Sequence
atgc intronic sequence ATGC exonic sequencegttagcttactatttttaattacttttagaaaatcttgcttgctgctcattgaatcattccccatgaagaaatataacctacgtatacttgtgttctgcagAGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G31060.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G31060.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA06G43820.1 (Glycine max), 3'ss of exon 12
gttagcttactatttttaattacttttagaaaatcttgcttgctgctcattgaatcattccccatg-aagaaatata--acctacgtatacttgtgttctgcagAGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAA
| | | | | ||| | ||||| | || | || | | | || ||| ||| ||| || | || | | | || | ||| || |||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||
-tca--tcaatggagtta-taactttggcattatggttctagtgaaatctgatcttatgaaggatgcaaggaatttagtaacttcattaatgctgtttgttcagGGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATG
upper sequence: AT2G31060.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA12G14080.1 (Glycine max), 3'ss of exon 12
gttagcttactatttttaattacttttagaaaatcttgcttgctgctcattgaatcattccccatg-aagaaat---ataacctacgtatacttgtgttctgcagAGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAA
| | | | | ||||| |||| | || | || | | | || |||| ||| ||| |||| | | || ||| || | ||| || |||||||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||||||
---atcccag-agatataatttctttggcattatggttctagtgaaatctgatcttatgaagcatgcaaggaatttagtaacttccttaatgctgt-ttgttcagGGGGCTGGTTGGGTACAGGAGCGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATG
upper sequence: AT2G31060.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 12
gttagcttactatttttaattacttttagaaaatcttgcttgctgctcattgaatcattccccatgaagaaatataacctacgtatacttgtgttctgcagAGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAA
| || || || | ||| | | || | |||| || ||| || | | | ||| | || |||| | | | | | | ||| || |||||||| ||||| ||||||||||||| |||||||| || |||||||| ||||||||||||||| |||
ttcagttttct-tgcttagtgatgaatattatatctattttactggatatatgaacttccccagatagtaaggataatttttcttttcggtttactttcagGGGCCTGGTTGGTTACAGGAGTGTGTTTAGCAGTGACACACGTGGCACTGGATTTATGCATCGTGCTTTCTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125252578|gb|EL266663.1|EL266663EST: GTCCCTGGAAATGAGGGTAGGACGAGACTGTCACTAACTTGTCCTTCAAG AGGTCTGGTTGGG
genomic: GTCCCTGGAAATGAGGGTAGGACGAGACTGTCACTAACTTGTCCTTCAAGgttagcttac ... tgttctgcagAGGTCTGGTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcattgaatcattccccatgaagaaatataacctacgtatacttgtgttctgcagAGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAA
atataac putative branch site (score: 3)
atgaagaaatataa TA-rich tract