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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcccatctgtgacaatgctgtttccattcttgggtcgatattctaactcaacatctctctctttagGTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAAT

Basic information

species Arabidopsis thaliana
transcript AT2G26590.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125230010|gb|EL244095.1|EL244095
EST:     AGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTAT                         GTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGT
genomic: AGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATgtaagcccat ... ctctctttagGTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatgctgtttccattcttgggtcgatattctaactcaacatctctctctttagGTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAAT
                             ttctaac  putative branch site (score: 1)
                                        catctctctcttt  putative PPT
                          atattctaa  TA-rich tract