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gtatggagaaagagataatgtttagatttgggtcacggagatgctttcacatgtctcttactcccttgactacaatgattacttaagatataatccggtgaccacatttttaatcggttgcagGAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCCTTGCAGATGCTTTGATCGAACATCTGAGTCCAATCCAG
species | Arabidopsis thaliana |
transcript | AT2G25840.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCTCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAG GAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCEST: gi|124986271|gb|EL058803.1|EL058803
genomic: CCTCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAGgtatggagaa ... tcggttgcagGAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTC
EST: TCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAG GAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCEST: gi|163977425|gb|ES119783.1|ES119783
genomic: TCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAGgtatggagaa ... tcggttgcagGAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTC
EST: CAATATATCAGATTGTTTTCAGGCAAGAAAAAAGAG GAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTC
genomic: CAATATATCAGATTG-TTTCAGGCAAGAAAAAAGAGgtatggagaa ... tcggttgcagGAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTC
actacaatgattacttaagatataatccggtgaccacatttttaatcggttgcagGAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCCTTGCAGATGCTTTGATCGAACATCTGAGTCCAATCCAG
ttttaat putative branch site (score: 3)
aatgattacttaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggagaaagagataatgtttagatttgggtcacggagatgctttcacatgtctcttactcccttgactacaatgattacttaagatataatccggtgaccacatttttaatcggttgcagGAAGTGATGGAGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCCTTGCAGATGCTTTGATCGAACATCTGAGTCCAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG