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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcattattcatagaagtgaaatgagttattttccttgagttaattgagtctcactttttattgtacaacaatggctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATCCGGTCGAGTTTCTTATCCAATATCGCAAGGGTGGTCCTAACTTCGGTTC

Basic information

species Arabidopsis thaliana
transcript AT2G20360.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116401381|gb|EG443973.1|EG443973
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116401379|gb|EG443971.1|EG443971
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|86077434|gb|DR373191.1|DR373191
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|164059191|gb|ES199172.1|ES199172
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAA
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAA
EST: gi|116383743|gb|EG426335.1|EG426335
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116401374|gb|EG443966.1|EG443966
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116401371|gb|EG443963.1|EG443963
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116401378|gb|EG443970.1|EG443970
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|125213729|gb|EL228510.1|EL228510
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTCGTCCCCCAT
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTT-GTCCCCCAT
EST: gi|116401372|gb|EG443964.1|EG443964
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116401376|gb|EG443968.1|EG443968
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116383740|gb|EG426332.1|EG426332
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|86081997|gb|DR377756.1|DR377756
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116383739|gb|EG426331.1|EG426331
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116387790|gb|EG430382.1|EG430382
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116401380|gb|EG443972.1|EG443972
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
EST: gi|116383046|gb|EG425638.1|EG425638
EST:     CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACG                         CCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC
genomic: CCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGgttagtcatt ... gctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccttgagttaattgagtctcactttttattgtacaacaatggctatttcagCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATCCGGTCGAGTTTCTTATCCAATATCGCAAGGGTGGTCCTAACTTCGGTTC
                   gtctcac  putative branch site (score: 3)
                                              ctatttc  putative PPT
                          tttttattgtacaa  TA-rich tract