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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattcttacttcaactatcattagcttggtttatttgatctatgtatattttgtctgaaaacctcgattatttttttggggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGATGATCATCTCAACTGCTGGTGATGGTTTCAACATCTTAATGCCTTACAACA

Basic information

species Arabidopsis thaliana
transcript AT2G19540.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124934919|gb|EL011947.1|EL011947
EST:     AGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAA                         GGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGAT
genomic: AGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattct ... ggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGAT
EST: gi|164169058|gb|ES194086.1|ES194086
EST:     CACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAA                         GGACAAAAAGATCTGAAGGAACTTCACTGGC
genomic: CACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattct ... ggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGC
EST: gi|86087136|gb|DR382895.1|DR382895
EST:     TAGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAA                         GGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGATG
genomic: TAGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattct ... ggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatctatgtatattttgtctgaaaacctcgattatttttttggggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGATGATCATCTCAACTGCTGGTGATGGTTTCAACATCTTAATGCCTTACAACA
 atttgat  putative branch site (score: 5)
      tatgtatattttgt  TA-rich tract