Sequence
atgc intronic sequence ATGC exonic sequencegtaggatacctttatgccattaccctttgggttgaactatttgtgtggtaaaattgaatttctttgtcttgttttactttggtagGTTGAAGCATTGTTTGAACTGATTAAAGGAATTATCAACGATTTGGATGAGCCGCAAGGTCTTGAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G17790.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 11
gtaggatacctttatgccattaccctttgggttgaactatttgtgtggtaaaattgaatttctttgtcttgttttactttggtagGTTGAAGCATTGTTTGAACTGATTAAAGGAATTATCAACGATTTGGATGAGCCGCAAGGTCTTGAG
|||| || | | | || | | |||||| | | ||| | | | || ||| ||| ||||||||||||||||||||||||||| || || ||||||| |||| |||| | | ||||
-----------gtatgttat-atcttacttgtctgattttttgtgagtttttattataaca---tagcatgatttgctt--gtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGAATCCCTAATAATGAG
upper sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA11G08390.1 (Glycine max), 3'ss of exon 11
gtaggatacctttatgccattaccctttgggttgaactatttgtgtggtaaaattgaatttc--tttgtcttgttttactttggtagGTTGAAGCATTGTTTGAACTGATTAAAGGAATTATCAACGATTTGGATGAGCCGCAAGGTCTTGAG
|||| || | | ||| ||| || |||| | ||| | | || ||| ||| ||||||||||||||||||||||||||| || || ||||||| |||| |||| | | | ||||
-----------gtatgttata----tcttacttgtgtgctttttggtgtaagttcttattataacataacatgatttgcttgtgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAG
upper sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 12
gtaggatacctttatgccattaccctttgggttgaactatttgtgtggtaaaattgaatttctttgtcttgttttactttggtagGTTGAAGCATTGTTTGAACTGATTAAAGGAATTATCAACGATTTGGATGAGCCGCAAGGTCTTGAG
|| ||| | | ||| |||| || || ||| ||| | | | | || || | || || |||||||| |||||||||||| | || ||||| ||||||| |||||||||| | | | ||||
-----gtatgtttcttctattgatgtttgttctgttct-tttcagtgtcctccctaatcatgtgccactacttgttctatg-tagGTTGAGGCATTGTTTGAATTAATAAAAGGGCTTATCAAGGATTTGGATGGGGATCTTCATGATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgaactatttgtgtggtaaaattgaatttctttgtcttgttttactttggtagGTTGAAGCATTGTTTGAACTGATTAAAGGAATTATCAACGATTTGGATGAGCCGCAAGGTCTTGAG
tttctttgtcttgttt CT-rich tract
taaaattgaatttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggatacctttatgccattaccctttgggttgaactatttgtgtggtaaaattgaatttctttgtcttgttttactttggtagGTTGAAGCATTGTTTGAACTGATTAAAGGAATTATCAACGATTTGGATGAGCCGCAAGGTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA