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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaaacatctattcttactttggtgttatagaatgatgttactgagtaacatctattactggcatttgcagTATTCTTTTGGATTAAAATCATGCTTCCATAAAGATTTCAATCTTGTAGTCAGCAAACTCTTTCTATG

Basic information

species Arabidopsis thaliana
transcript AT2G17430.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17430.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 12
--------------------------gtaaagaaacatctattcttactttgg------tgttatag--aatgatgttactgagtaacatctattactggcatttg--cagTATTCTTTTGGATTAAAATCATGCTTCCATAAAGATTTCAATCTTGTAGTCAGCAAACTCTTTCTATG
                           | |  ||   | | || || || | |      | || ||   |  |      |  |  ||  |  |||  |   |  ||  |||||||||||||| || ||||| |||||||||||  ||||||| |||||  |||  ||  |   | || |
gtaatgaattgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcagTATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttggtgttatagaatgatgttactgagtaacatctattactggcatttgcagTATTCTTTTGGATTAAAATCATGCTTCCATAAAGATTTCAATCTTGTAGTCAGCAAACTCTTTCTATG
                           gagtaac  putative branch site (score: 2)
         ttatagaat  TA-rich tract