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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatagGTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G14120.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14120.3 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 10
gtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatagGTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAG
|||||| ||       | || |           |   |  |   || |  |||    |||||| |||||  | |   | | | | | || |   || |     |  | ||  | |  || | ||| |||| |   ||||| ||||||||||| |||||  | ||||| ||||||||  |||| ||||| || |||||||| |||||||| || |  |||||| || | |||
gtaggtctaatcgc-cctcttattgcacacacacccctgatattttcttagttgaaaccacattcttatcctacc-aaatatgtaaattatttggccaactgaaaaaatacttat--ctattattttcatgttattagGTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAG

upper sequence: AT2G14120.3 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 10
gtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatagGTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAG
|||||| |    |    | ||      |     ||  |  |   || |  ||     |||||| |||||  | |   |  || | | || |    | |  ||||  | ||  | |  || | ||| ||||   | ||||| || |||||||| |||||  | ||||| ||||||||  |||| ||||| || ||||||||||||||||| || |  || ||| || | || 
gtaggtcttatcaccctcttat-----tacacacacctgatattttcttagtcaaacccacattcttatcctaccacatattgtaaattatttgaccaa-ctgaaaaatacttat--ctattattttcatgcacttagGTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAA

upper sequence: AT2G14120.3 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 11
---------gtagg----tttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatactt--------attttgcttgagttttttactttt----acagcaactctgattagtatctcttgctttcattctcatctgcatagGTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAG
          ||||    ||  | | | | ||||||      |    | ||||    |||| | |    | || ||  ||        |||| || || | ||||   ||||    |   | |   | |    ||  |  ||||  |      || |    |||| || |||||||||||||| || ||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |  |||||| ||||||||
gtatgtcttatagggctcttgttttttcttcctaagttctctgagtaaattttgaatttatttctaaacttcaaattgttttgccattatttagcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcagGTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatagGTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAG
               ctctgat  putative branch site (score: 4)
                           tctcttgctttcattc  putative PPT
                    attagtat  TA-rich tract