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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaaatctggtactctcctttggcaatatcatggttttcccgattcttgtttgcaatattcttaagagatgggtgtgtttttttttctttggatttgcagACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAG

Basic information

species Arabidopsis thaliana
transcript AT2G07690.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07690.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: LOC_Os02g55410.2 (Oryza sativa), 3'ss of exon 12
------------------gtttgaaatctggtactctc---ctttggcaatatcatggttttcccgattcttgtttgcaatattcttaagagatgggtgtgtttttttttctttggatttgcagACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAG
                    ||||  | |  || | ||    ||||  ||| |  |     | |     ||| | |||||     | |   | | |     |||| | ||  |    |   |||||||| || || || || |||||||||||||| || ||||||||||||||||| ||||| ||||| || ||  |||| | ||||   |||||||||
gtcagtcaaagtttttattattgacttgtactattttcatattttgaaaatgtattaacagttctagc-cttatatgcaaggcaatca---gtttgacacattttctattgct--actcctcagACTGCACAAGATAACATTGATCTGCAGACAACCATCCTTTCTAGATTTGATCTAATCTTTATTGTTAAAGATGTCAGAATGTATGATCAAGACAAG

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GRMZM2G075978_T01 (Zea mays), 3'ss of exon 12
gtttg-aaatctggtactc--tcctttggcaatatcatggttttcccgattct----tgttt--gcaatattcttaaga-gatgggtgtgtt---tttttttctttggatttgcagACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAG
||| | |||  || |||||  |   |    ||||||    ||||    | | |    ||||   || |||     ||||  ||   | ||     |||| || |   | |   ||||| || || || ||||| ||||||||||| || |||||||||||||||||||| ||||| || |||||||| ||||| | ||||   ||||| |||
gttggtaaacatgttactcattgtctcaataatatc-catttttgtaaagtgtaaactgttctagccatacatgcaagacaattaatttgacaaattttcttttgctgttcatcagACCGCGCAAGATAATATTGATCTGCAGACGACCATTCTTTCTAGATTTGATCTAATCTTTATCGTCAAGGATATCAGAATGTATGATCAAGATAAG

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GRMZM2G450055_T01 (Zea mays), 3'ss of exon 12
gtttg-aaatctggtactctcctttggcaatatcatggttttcccgattct------tgtttgcaatattcttaagagatgggtgtgtt-------tttttttctttggatttgcagACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAG
||| | |||  || |  | |    |    |||       | |    | | |      ||||      || | |   |||    | | ||       ||| |||  |||      |||||||| || || ||||| ||||| ||||| || |||||||||||||||||||  ||||| |||||||| || ||||| | ||||  |||||| |||
gttggtaaacatgtttttattgactcaacatagatccactatataaagtatataaactgttctagccatacatgcaagacaattattttgacaaattttcttttgttgttccaacagACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 11
gtttgaaatctggtactctcctttggcaatatcatggttttcccgattcttgtttgcaatattcttaagagatgggtgtgtttttttttctttggatttgcagACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAG
||       |   |    ||||  |      || |   ||     |||| || ||   || | || |  ||     |     |     |   |  |||  ||||||||||| || || |||||  ||||||||||||||||||| ||||||||  | || |||||||| || || ||||||| |||    || || |||
gtccatggccccttttcttcctcagatttgttctttacttcttatattcatgcttatgatttactaagcaggcaactaa---taaaactacatacattc-cagACTGCTCAAGATAACATCGACTTGCAGACAACAATTCTTTCAAGATTTGACTTGATTTTCATTGTGAAAGATATCAGGATGTACAGTCAGGATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtttgcaatattcttaagagatgggtgtgtttttttttctttggatttgcagACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAG
                              tgtttttttttctttg  CT-rich tract
                              tgtttttttttcttt  TA-rich tract