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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatttccttcaaaccatcacctctcttgtgcttgttttttcttggaatcttacgctttataaatggcgatgatgtagATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCATAACCGGTGCAACCATATATGTGGACAATGGTTTGAATGCAATGGGCGT

Basic information

species Arabidopsis thaliana
transcript AT2G05990.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125267705|gb|EL281790.1|EL281790
EST:     ATAATGGGCCTATTCAGAAAACACTGACCGCAG                         ATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA
genomic: ATAATGGGCCTATTCAGAAAACACTGACCGCAGgttcatttcc ... gatgatgtagATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA
EST: gi|125308534|gb|EL322619.1|EL322619
EST:     AGAAAACACTGACCGCAG                         ATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA
genomic: AGAAAACACTGACCGCAGgttcatttcc ... gatgatgtagATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgtgcttgttttttcttggaatcttacgctttataaatggcgatgatgtagATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCATAACCGGTGCAACCATATATGTGGACAATGGTTTGAATGCAATGGGCGT
                        atcttac  putative branch site (score: 3)
                                 tttataaat  TA-rich tract