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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaaaattctgagtcctttcacttcaatatggatggtctgtcacatttctgatgaaaccctgctaactaaatatgtatacctttggtttatgcagTCCAAAATGGCTACTGAAGCAAGAAGTCTCAAAGATTGTGAAATCCATAAATAGGCAACTGCGCGAAAAGTCTGTTAAGACAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G02560.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA17G00570.1 (Glycine max), 3'ss of exon 11
----gcaaaaattctgagtcctttcacttcaatatggatggtctgtcacatttctga-tgaaacc-ctgctaactaaatatgtatacctttggtttatgcagTCCAAAATGGCTACTGAAGCAAGAAGTCTCAAAGATTGTGAAATCCATAAATAGGCAACTGCGCGAAAAGTCTGTTAAGACAAAG
    || |  | |     |  |   |     |    || | | |   | |  ||  | || | |   |  | |||   |  | |      ||    |||||||||   |||| |  ||||||||||||| ||||||||||| ||||| |||||||||||  |||| || || ||| |||||||||||
aatggctatcacttcagcttttcctatagttaagccgaggttttacaataactcaaaatgcagcaattattgactgtcttagcactgacatg--caatgcagTCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAG

upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA07G40230.2 (Glycine max), 3'ss of exon 12
--gcaaaaattctgagtcctttcacttcaatatggatggtctgtcacatttctgatgaaaccctgctaactaaatatgtatacctttggttt---atgcagTCCAAAATGGCTACTGAAGCAAGAAGTCTCAAAGATTGTGAAATCCATAAATAGGCAACTGCGCGAAAAGTCTGTTAAGACAAAG
  || |  | |     |  |   |     |     | | | |   | |   |  |  |  |     | | | | |   | || |  ||   |   |||||||||   |||| |  ||||||||||||| || |||||||| ||||| |||||||||||  |||| || || ||| | |||||||||
tggctatcacttcagcttttcctatagttaagcccaggttttacaataacacataaaatgcagcaattattgactgcct-tagcactgacatgcaatgcagTCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAG

upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 12
-----------gcaaaaattctgagtcctttcacttcaatatggatggtctgtcacatttctgatg-aaaccctgctaactaaatatgtatacctttggtttatgcagTCCAAAATGGCTACTGAAGCAAGAAGTCTCAAAGATTGTGAAATCCATAAATAGGCAACTGCGCGAAAAGTCTGTTAAGACAAAG
              | |||| | | |   |  | |  | ||||  | |||| | | ||||  | |    |  ||| |  | |||| | | ||       |||||||||||||| |||| || |||||||||||||  |||| ||||| ||||| |||||  | || ||  | || ||  || | ||||| |||
gccttgtttttatcataattat-attgtctatattatactatgccttgtctat-aaattttagttatggatgctgatgccaaaatgtttgtat------tttatgcagTCCAAGATGGTTATTGAAGCAAGAAGTGCCAAAAATTGTTAAATCTATAAACCGACAGCTAAGAGAGAAAACTATCAAGACGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacatttctgatgaaaccctgctaactaaatatgtatacctttggtttatgcagTCCAAAATGGCTACTGAAGCAAGAAGTCTCAAAGATTGTGAAATCCATAAATAGGCAACTGCGCGAAAAGTCTGTTAAGACAAAG
                       taactaaatatgtata  TA-rich tract