Sequence
atgc intronic sequence ATGC exonic sequencegtagatttcgttatgcatcgttgctgtattctcgatgttgagacaacttctcatactcatcctcggataaaatcagGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G78920.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G78920.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA08G24120.1 (Glycine max), 3'ss of exon 10
-----------------gtag--atttcgttatgcatcgttgctgtattc---tcgatgttgagacaacttctcatactcatcctcggataaaat--cagGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTG
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ggactaaacatatttaagtcaccactctaaccagtactattattgtgtctcatcagatttcactggttcttctaagttgcaacttatgattgaattgcagGTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATGCTTATATTTGTTTTTAGTGCTTGGGCCTGTTCTGCTGTTGGCAGAACTG
upper sequence: AT1G78920.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA07G00350.1 (Glycine max), 3'ss of exon 11
-----------------------gtagatttcgttatgcatcgttgctgtattctc-gatgttgagacaacttctcatactcatcctcggataaaat--cagGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTG
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ctaaacatatttaagtcactcccctaattattattac-tattattg-tgtctcatcagatttcactggttcttctaagttgcaacttatgattgagttgcagGTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATGCTTATATTTGTTTTTAGTGCTTGGGCCTGTGCTGCTGTTGGCAGAACTG
upper sequence: AT1G78920.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
----gtagatttcgttatg-catcgttgctgtattctcgatgttgagacaacttctcatactcatcctcggataaaatcagGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTG
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gtaagtggacactactttgatctcttcatcgtgtttacattctctaactcactgct--tttttatgttaatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125264374|gb|EL278459.1|EL278459EST: GAGGTTTCAGCGTTTGCTAATGTGTCTTTCAAAGAG GTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTA
genomic: GAGGTTTCAGCGTTTGCTAATGTGTCTTTCAAAGAGgtagatttcg ... ataaaatcagGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctgtattctcgatgttgagacaacttctcatactcatcctcggataaaatcagGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTG
ataaaatca TA-rich tract