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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaataactaccgctgaggccctgatcttactggtttcagtaatattatgatccggctctgaatgaatgtatctttgtttcttccctgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G76030.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: EFJ13375 (Selaginella moellendorffii), 3'ss of exon 10
gtaataaataactaccgctgaggccctgatcttactggtttcagtaatattatgatccggctctgaatgaatgtatctttgtttcttccctgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
                                    | ||    |  |||| ||    |    || |  | ||    || | | |||   |      ||||| |||||||| ||||||||| | ||||| ||||||||||| ||||||
------------------------------------gtttgtgctggtattttgcagtgtacatgtaacactgctctttggctgcttgtgtt----tcagATCTATCCACCTATCAACGTGTTGCCATCGCTTTCTCGTTTGATGAAG

upper sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: EFJ11911 (Selaginella moellendorffii), 3'ss of exon 10
gtaataaataactaccgctgaggccctgatcttactggtttcagtaatattatgatccggctctgaatgaatgtatctttgtttcttccctgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
                                     ||||  ||  |  |||  | | | | |  ||| |    |  |  ||   | | ||     ||||| |||||||| ||||||||| | ||||| ||||||||||| ||||||
-------------------------------------gttt--gtgctggtattttgcag-tgtacatgtaacacttctctttggctgcttgtgtttcagATCTATCCACCTATCAACGTGTTGCCATCGCTTTCTCGTTTGATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124814230|gb|EH899096.1|EH899096
EST:     CAACTTCACAACAGACAG                         ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
genomic: CAACTTCACAACAGACAGgtaataaata ... tgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
EST: gi|86058263|gb|DR354020.1|DR354020
EST:     ATATCGATAGGCAACTTCACAACAGACAG                         ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
genomic: ATATCGATAGGCAACTTCACAACAGACAGgtaataaata ... tgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
EST: gi|116457675|gb|EG500267.1|EG500267
EST:     ACATTACTGAAGGTCAGATATATATCGATAGGCAACTTCACAACAGACAG                         ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
genomic: ACATTACTGAAGGTCAGATATATATCGATAGGCAACTTCACAACAGACAGgtaataaata ... tgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
EST: gi|164117799|gb|ES124632.1|ES124632
EST:     TATCGATAGGCAACTTCACAACAGACAG                         ATATATCCACCCATACAACGTGCTTCCATCCCTTTCTCGTTTAA
genomic: TATCGATAGGCAACTTCACAACAGACAGgtaataaata ... tgaaaaacagATATATCCACCCAT-CAACGTGCTTCCATCCCTTTCTCGTTTAA
EST: gi|163990922|gb|ES138772.1|ES138772
EST:     CACAACAGACAG                         ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
genomic: CACAACAGACAGgtaataaata ... tgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattatgatccggctctgaatgaatgtatctttgtttcttccctgaaaaacagATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG
                            tatctttgtttcttcc  CT-rich tract
                    aatgaat  TA-rich tract