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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgccttttttctcttacatgcaaatatgtcgtcgtttttttgtttgttaagtcttagatctctggtatcattattactcagtgctgttcatgtctttttgtatttgatctataatttggtgtcagGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTGCAAAAT

Basic information

species Arabidopsis thaliana
transcript AT1G73950.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73950.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA05G07960.1 (Glycine max), 3'ss of exon 11
gtattttgccttttttctcttacatgcaaatatgtcgtcgtttttttgtttgttaagtcttagatctctggtatcattattactcagtgctgttcatgtctttttgtatttgatctataattt---ggtgtcagGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTGCAAAAT
                                     || || | || |||||| | | ||||          ||    | |  || |  |  | |  || |||  |        || ||| |     |||||||| |||||||| || ||||| |||||||||||||||||||| || |||||||| || ||||| ||||| ||||| ||||||
----------------------------------atttccttatgttctttgttcaatattaggaacaaaagttctcagtaagccaataattctgacttcctttgttggcgtgcttaaaatattcgaatgtcagGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACAGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAAT

upper sequence: AT1G73950.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv17s0000g04160.t01 (Vitis vinifera), 3'ss of exon 11
gt-attttgccttttttctcttacatgcaaatatgtcgtcgtttttttgtttgttaagtcttagatctctggtatcattattactcagtgctgt-----tcatgtctttttgtatttgatctataatttggtgtcagGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTGCAAAAT
|| ||  |   | |  |  | | | |    | ||  | |     | |    | | |||| ||  || |    |||   ||    |   |||| |     |  ||  ||  | | | | ||   |  |||  |  |||||||||||||||||||| ||||||||||| ||| |||||||||| || | |||| ||||||| ||||| ||||| ||||||
gtgatcatagttctcatagcattcctttgtacattaccttaaaatctgaagt-taaagttttcaatttacattatttctaaatttttttgctatcatagttctgatttcatttgtattattggtttttttctcccagGTGTGGAGACTTCAAGCTGCACTTGGTGAGCAATCAGAAATCACAAAGTACAGTAAGCAGGAGTATGAAAGACTTCAAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattactcagtgctgttcatgtctttttgtatttgatctataatttggtgtcagGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTGCAAAAT
                               atttgat  putative branch site (score: 5)
                        tttttgtatttgatct  TA-rich tract