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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttttggcatcaatgaccatttcctacttgctttctatgaaatctcatctcaccaatcgacatgttgtttcctatacttttacagCTGATGTTTTTGAAGATACTGCTCCCTTTGCTACGTCAGTCATTGATGGATACAACGTTTGCATCTTCGCCTATGGCCAGACTGGTACTGGGAAAACTTT

Basic information

species Arabidopsis thaliana
transcript AT1G72250.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72250.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA08G18590.1 (Glycine max), 3'ss of exon 10
gtgatttttggcatcaatgaccatttcctacttgctttcta-tgaaatctcatctcaccaatcgacatgtt-gtttcctatacttttacagCTGATGTTTTTGAAGATACTGCTCCCTTTGCTACGTCAGTCATTGATGGATACAACGTTTGCATCTTCGCCTATGGCCAGACTGGTACTGGGAAAACTTT
        |     ||   |   |||   |   | ||   | |  ||    |   | |   |  |||  ||  |||  | | |||||| ||||||| |||||||||| || || || ||||| || |||||  | ||||||||||| || ||||| || || ||||| |||||||| || || ||||||||
-------gtattgccaggaattctttaggatgaggttctgaattgaacacaaatgctcagtttaacagatttatttatttttcttttatagCTGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGATACAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctatgaaatctcatctcaccaatcgacatgttgtttcctatacttttacagCTGATGTTTTTGAAGATACTGCTCCCTTTGCTACGTCAGTCATTGATGGATACAACGTTTGCATCTTCGCCTATGGCCAGACTGGTACTGGGAAAACTTT
                atctcac  putative branch site (score: 3)
                                     tttcctatactttt  putative PPT
                                          tatactttta  TA-rich tract