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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaacatccatacttctctctctctctcttaaatcatcatatatagtttcctttcatcaagtagtatagctttcccggcatttgttcttgcagATATGACTGGCTAGCTAACAAGACTCTTAGAACCGGCTATTTTATATGGGCAATGGTTGCCTATGGATTAG

Basic information

species Arabidopsis thaliana
transcript AT1G63690.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164158368|gb|ES048325.1|ES048325
EST:     GGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAG                         ATATGACTGGCTAGCTAAC
genomic: GGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAGgttcaacatc ... gttcttgcagATATGACTGGCTAGCTAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatagtttcctttcatcaagtagtatagctttcccggcatttgttcttgcagATATGACTGGCTAGCTAACAAGACTCTTAGAACCGGCTATTTTATATGGGCAATGGTTGCCTATGGATTAG
                                          tttgttctt  CT-rich tract
                       tagtata  TA-rich tract