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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctatatgttgcccttgatgacattttgaaaacatatgtatattatttgtgactgataatgtttgtgggaactaacagTACGTACTGAAGATTGGGGAAGGACCAGTGGCACAATGTATTAGCGGCTTTACCGCACTTGATATCCCTCCACCTCGTGGACCTCTCTG

Basic information

species Arabidopsis thaliana
transcript AT1G62290.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125146099|gb|EL181086.1|EL181086
EST:     CTGTTTCATTCACCATTGGAGGCAAAGTCTTTGATCTTGCTCCCGAAGAG                         TACGTACTGAAAGAATTGGGGAAGGACCAGTGGCACAATGTATT
genomic: CTGTTTCATTCACCATTGGAGGCAAAGTCTTTGATCTTGCTCCCGAAGAGgtacattcta ... gaactaacagTACGTACTGAA-GA-TTGGGGAAGGACCAGTGGCACAATGTATT
EST: gi|125217478|gb|EL231561.1|EL231561
EST:     TGTTTCATTCACCATTGGTAGGCAAAGTCTTTGATCTTGCTCCCGAAGAG                         TACGTACTGAA
genomic: TGTTTCATTCACCATTGG-AGGCAAAGTCTTTGATCTTGCTCCCGAAGAGgtacattcta ... gaactaacagTACGTACTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaaaacatatgtatattatttgtgactgataatgtttgtgggaactaacagTACGTACTGAAGATTGGGGAAGGACCAGTGGCACAATGTATTAGCGGCTTTACCGCACTTGATATCCCTCCACCTCGTGGACCTCTCTG
                           gactgat  putative branch site (score: 3)
     aaaacatatgtatatt  TA-rich tract