Sequence
atgc intronic sequence ATGC exonic sequencegtaatattctttgaactctggtaaatattgaatgactcttagttatgtttcagtgtttttgacatctcttttgttctttcagATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTTGTTTAATTC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G58350.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G58350.3 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA17G26570.1 (Glycine max), 3'ss of exon 13
-----gtaatattctttgaactctggtaaatattgaatgactcttagttatgtttcagtgtttttgacatctcttttgttctttcagATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTTGTTTAATTC
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gtgtgtcaacattttagaagtgatggtgttcgtcaaatcatcc---gcttgaaattaggggctaaattttgtcctttgtt--tgcagAGAGCATGATGGAGCCATTTCTAAGATATCTATATACATATGTTTCGGTATCTGGTCCACACTTGGGGTATCTTTACAGTTCAAACTCTTTGTTTAATTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116429147|gb|EG471739.1|EG471739EST: TCAGAACAGCAATTGCCG ATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTT
genomic: TCAGAACAGCAATTGCCGgtaatattct ... gttctttcagATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaatgactcttagttatgtttcagtgtttttgacatctcttttgttctttcagATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTTGTTTAATTC
ttttgac putative branch site (score: 3)
catctcttttgttctt CT-rich tract
ttagttat TA-rich tract