1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtgtctaacctcttttcaacataaactccaaaaatatatgcaaacattgggctgtatgactaactctgtgattatgatttgattacagGACGAGCTCTAAGCAAAGGTGGAGGATTAAAAAGTTTTCAGAGTCTTAATTGTTCTTTTAAACTTTTCTTTTAAAAGGAATTCTTTAGCTCTAGTTTGGT
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCAT GACGAGCTCTAAGCEST: gi|124801038|gb|EH890561.1|EH890561
genomic: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCATgtatgtgtct ... ttgattacagGACGAGCTCTAAGC
EST: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCAT GACGAGCTCTAAGCAAAGGEST: gi|125259214|gb|EL273299.1|EL273299
genomic: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCATgtatgtgtct ... ttgattacagGACGAGCTCTAAGCAAAGG
EST: GATGCCGCCCAT GACGAGCTCTAAGTCAAAGGTGGAGGATTAAAAAGTTTTCAGAGTCTTAATEST: gi|164038721|gb|ES110882.1|ES110882
genomic: GATGCCGCCCATgtatgtgtct ... ttgattacagGACGAGCTCTAAG-CAAAGGTGGAGGATTAAAAAGTTTTCAGAGTCTTAAT
EST: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCAT GACGAGCTCTAAGEST: gi|125265253|gb|EL279338.1|EL279338
genomic: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCATgtatgtgtct ... ttgattacagGACGAGCTCTAAG
EST: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCAT GACGAGCTCTAAGCAAAGGTGGAGGATTAAAAAGTTTTCAGAGTCTTAATT
genomic: CCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCATgtatgtgtct ... ttgattacagGACGAGCTCTAAGCAAAGGTGGAGGATTAAAAAGTTTTCAGAGTCTTAATT
atatatgcaaacattgggctgtatgactaactctgtgattatgatttgattacagGACGAGCTCTAAGCAAAGGTGGAGGATTAAAAAGTTTTCAGAGTCTTAATTGTTCTTTTAAACTTTTCTTTTAAAAGGAATTCTTTAGCTCTAGTTTGGT
attatgatttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtctaacctcttttcaacataaactccaaaaatatatgcaaacattgggctgtatgactaactctgtgattatgatttgattacagGACGAGCTCTAAGCAAAGGTGGAGGATTAAAAAGTTTTCAGAGTCTTAATTGTTCTTTTAAACTTTTCTTTTAAAAGGAATTCTTTAGCTCTAGTTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA