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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatattataatattgttatgtaatcctaatctctatgtctcgaatgatgtcataatgttgttggaaaacgtcttatcttttagGTTCTTGCTGTGAAGAAAATTGATTCGTCTGCTCTCCCACATGGCATGACCGATGATTTCATTGAAATGGTATCGAAAATAGCCAATTTGGATCATCCAA

Basic information

species Arabidopsis thaliana
transcript AT1G53730.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53730.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv09s0002g00150.t01 (Vitis vinifera), 3'ss of exon 11
---gtaagatattataatattgtt-atgtaatcctaa---tctctatgtc-tcgaatgatgtcataatgttgttggaaaacgtctt-----atcttttagGTTCTTGCTGTGAAGAAAATTGATTCGTCTGCTCTCCCACATGGCATGACCGATGATTTCATTGAAATGGTATCGAAAATAGCCAATTTGGATCATCCAA
   | |   |  | | |     || ||| |||   ||     | || ||  |  | |  | | |||   |  ||  ||    ||||     || || |||||| ||||||| |||||||| ||||| |||||||||||  ||    |  | || |||||||  || || ||||| || ||  || | ||| |||| ||||
accgaacattgatgtcaagcaattgatggaattaaaagaccatttaggttgtttatttgtttaatatcatccttaaaatttctctttgccaatgttgtagGTTGTTGCTGTCAAGAAAATAGATTCATCTGCTCTCCCCGATCAATTTTCTGAAGATTTCACAGAGATAGTATCTAATATCTCCCAGTTGCATCACCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctatgtctcgaatgatgtcataatgttgttggaaaacgtcttatcttttagGTTCTTGCTGTGAAGAAAATTGATTCGTCTGCTCTCCCACATGGCATGACCGATGATTTCATTGAAATGGTATCGAAAATAGCCAATTTGGATCATCCAA
 tcctaat  putative branch site (score: 2)
                                          tcttatctttt  putative PPT
                                            ttatctttta  TA-rich tract