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gtacaatatctattggacttagagatcttatatcaagtccaatcttctaagaatattttttgctctgcatttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
species | Arabidopsis thaliana |
transcript | AT1G51710.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAG GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGEST: gi|86084161|gb|DR379920.1|DR379920
genomic: GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAGgtacaatatc ... ttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
EST: GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAG GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGEST: gi|125269879|gb|EL283964.1|EL283964
genomic: GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAGgtacaatatc ... ttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
EST: CAAAGGACAGTGATGTGAAAATGACTGATGCAGAG GCGTCTGCAAATGGAAGTGGAGAATCGTCCACAGTAAACCCACAGGAAG
genomic: CAAAGGACAGTGATGTGAAAATGACTGATGCAGAGgtacaatatc ... ttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
tcttatatcaagtccaatcttctaagaatattttttgctctgcatttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
tttgttt CT-rich tract
aatcttctaagaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatatctattggacttagagatcttatatcaagtccaatcttctaagaatattttttgctctgcatttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA