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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataagaagatgtctaatatctttcatacatgcttgcatcagaatactgcaagggctttgcttctttttcttatttcagggtttgaaatttaaatttggttttggccagGGAACAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATGAGTTAACCGGAGGCACATCACTTGCAGCAA

Basic information

species Arabidopsis thaliana
transcript AT1G50510.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19742066|gb|AU227419.1|AU227419
EST:     GCTGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAGCAAG                         GGAACAAAACGTTACTGGAAATTCAGAAACTCCATTCTTACTTGCACGGGT
genomic: GCTGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAGCAAGgttataagaa ... ttttggccagGGAACAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGT
EST: gi|163981288|gb|ES010442.1|ES010442
EST:     GCTGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAGCAAG                         GGAACAAAACGTTACTGGAAATGCAGAA
genomic: GCTGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAGCAAGgttataagaa ... ttttggccagGGAACAAAACGTTACTGGAAATGCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgcttctttttcttatttcagggtttgaaatttaaatttggttttggccagGGAACAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATGAGTTAACCGGAGGCACATCACTTGCAGCAA
                           tttgaaatttaaattt  TA-rich tract