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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgccttacatgatagtaactctatgcattgttcttctacacttttgtcttttgctaatccatatttttcttttttccagTGGCATATCCTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G43190.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829251|gb|CK118935.1|CK118935
EST:     CATCCTTGCTATGGTGATACAGGAG                         TGGCATATCCTCAG
genomic: CATCCTTGCTATGGTGATACAGGAGgtatgttgcc ... ttttttccagTGGCATATCCTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgttcttctacacttttgtcttttgctaatccatatttttcttttttccagTGGCATATCCTCAG
                           tgctaat  putative branch site (score: 2)
                                 tccatatttttctttt  CT-rich tract
                              taatccatatttttct  TA-rich tract