1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatactgaaaacactctttttaaaaatttctttgagctacatcctttccacagagttgttgagaatggaaatgattcaaatttgatcgtatcttccttacagGGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAG
species | Arabidopsis thaliana |
transcript | AT1G31970.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGCGGGTAAAAAGGGCGTTGCACACACGTTCTTCACGCCACTGAACAAG GGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGEST: gi|124880874|gb|EH959776.1|EH959776
genomic: GAGCGGGTAAAAAGGGCGTTGCACACACCTTCTTCACGCCACTGAACAAGgtaatactga ... ttccttacagGGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTG
EST: GAGCGGGTAAAAAGGGCGTTGCACACACCTTCTTCACGCCACTGAACAAG GGTCTTGCAGGAGAACTTGTGAATGTTCTTEST: gi|164069573|gb|ES204887.1|ES204887
genomic: GAGCGGGTAAAAAGGGCGTTGCACACACCTTCTTCACGCCACTGAACAAGgtaatactga ... ttccttacagGGTCTTGCAGGAGAACTTGTGAATGTTCTT
EST: GAGCGGGTAAAAAGGGCGTTGCACACACGTTCTTCACGCCACTGAACAAG GGTCTTGCAGGAGAACEST: gi|125009486|gb|EL081755.1|EL081755
genomic: GAGCGGGTAAAAAGGGCGTTGCACACACCTTCTTCACGCCACTGAACAAGgtaatactga ... ttccttacagGGTCTTGCAGGAGAAC
EST: TTCACGCCACTGAACAAG GGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTG
genomic: TTCACGCCACTGAACAAGgtaatactga ... ttccttacagGGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTG
ccacagagttgttgagaatggaaatgattcaaatttgatcgtatcttccttacagGGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAG
atttgat putative branch site (score: 5)
tatcttcctt putative PPT
aaatgattcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactgaaaacactctttttaaaaatttctttgagctacatcctttccacagagttgttgagaatggaaatgattcaaatttgatcgtatcttccttacagGGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA