1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtgattttgttctgttttgatagttgcttcagatctcaacggaccatttgtgcatgattacttagtgctgttgcataataatactcgtctggctgtagaatcttaacagcatacatgatatacgggttccacaaattccgcatttagaacaaattgacttcatcataattgacctcgagggaccatggaattgcagATAGAGCCTGAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAAGGAGTTCTACTTGCTGGTGTTCCTGGAGCTGGTGGATTTGATGCCATAT
species | Arabidopsis thaliana |
transcript | AT1G31910.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAGGATCAGAATTCTTATGCGTCAGATGGGTGAGGCGGCTAGCGTTCCG ATAGAGCCTGAATCTCAAACTCAACTTTTEST: gi|86070800|gb|DR366557.1|DR366557
genomic: TGAGGATCAGAATTCTTATGCGTCAGATGGGTGAGGCGGCTAGCGTTCCGgtaagtgatt ... ggaattgcagATAGAGCCTGAATCTCAAACTCAACTTTT
EST: TGAGGATCAGAATTCTTATGCGTCAGATGGGTGAGGCGGCTAGCGTTCCG ATAGAGCCTGAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAAEST: gi|125301342|gb|EL315427.1|EL315427
genomic: TGAGGATCAGAATTCTTATGCGTCAGATGGGTGAGGCGGCTAGCGTTCCGgtaagtgatt ... ggaattgcagATAGAGCCTGAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAA
EST: ATGGGTGAGGCGGCTAGCGTTCCG ATAGAGCCTGAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAA
genomic: ATGGGTGAGGCGGCTAGCGTTCCGgtaagtgatt ... ggaattgcagATAGAGCCTGAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAA
atttagaacaaattgacttcatcataattgacctcgagggaccatggaattgcagATAGAGCCTGAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAAGGAGTTCTACTTGCTGGTGTTCCTGGAGCTGGTGGATTTGATGCCATAT
aattgac putative branch site (score: 3)
atcataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgattttgttctgttttgatagttgcttcagatctcaacggaccatttgtgcatgattacttagtgctgttgcataataatactcgtctggctgtagaatcttaacagcatacatgatatacgggttccacaaattccgcatttagaacaaattgacttcatcataattgacctcgagggaccatggaattgcagATAGAGCCTGAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAAGGAGTTCTACTTGCTGGTGTTCCTGGAGCTGGTGGATTTGATGCCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA