Sequence
atgc intronic sequence ATGC exonic sequencegtatgaaattttcaaatactcacggagaaagtgtctttcccagtctacctatgtagtccattcctatagaaattctgatttgaactaccacgtggcttcttatctcacctgaatcctgagatgtcttattacaaagccttgttgagtttttaaattattattttttctattcttgcagTGATCATGTTCTTGATATCTTGGTCATTCACTGTGGTTGCCATTGCACTTGCAAGTCTTATATACAAATACGTTGGCCTAAAAGGAAAGGCTGGGGACTG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G30450.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G30450.3 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA15G22520.1 (Glycine max), 3'ss of exon 10
gtatgaaattttcaaatactcacggagaaagtgtctttcccagtctacctatgtagtccattcctatagaaattctgatttga-actaccacgtggcttcttatctcacctgaatcctgagatgtcttattacaaagccttgttgagtttttaaattattattttttctattcttgcagTGATCATGTTCTTGATATCTTGGTCATTCACTGTGGTTGCCATTGCACTTGCAAGTCTTATATACAAATACGTTGGCCTAAAAGGAAAGGCTGGGGACTG
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-------------------------------------------------------------------------catagtttgctattattcattaggtgcttacc--actgtggtactgc----tgctgtgtgagtgttacattgaaacttgattctgtggtgatccttacctatgcagTGATCATGTTCCTAATCTCTTGGTCATTCACCGTGGTGTCTTTGCTCCTTGCAAGCCTCATATATAAGTACGTGAGCATTAAAGGAAAGGCTGGGGACTG
upper sequence: AT1G30450.3 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 3'ss of exon 11
gtatgaaattttcaaatactcacggagaaagtgtctttcccagtctacctatgtagtccattcctatagaaattctgatttgaactaccacgtg-gcttcttatctcacctgaatcctgagatgtcttattacaaagccttgttgagtttttaaattattattttttctattct-tgcagTGATCATGTTCTTGATATCTTGGTCATTCACTGTGGTTGCCATTGCACTTGCAAGTCTTATATACAAATACGTTGGCCTAAAAGGAAAGGCTGGGGACTG
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------------------------------------------------------------------tggatggtcgtgtacgtgcatgtgcatgtgtgtattactccacatgcat------gtatttttttttaggatcatattta--------acagctgcttcttgtgttttgtgcagTGATCATGTTCTTGATATCTTGGTCATTTACTGTGGTGTCCCTAGCCCTTGCAAGTCTCATATATTATTATGTATGCATCAAAGGGAAGGCTGGGGACTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47829383|gb|CK119067.1|CK119067EST: GAAATATCATCATTGGAGCCTTTCCTTTGTTGGAGCCTCACTTTGCATAG TGATCATGTTCTTGATATCTTGGTCATTCACTGTGGTTGCCATTGCACTTG
genomic: GAAATATCATCATTGGAGCCTTTCCTTTGTTGGAGCCTCACTTTGCATAGgtatgaaatt ... attcttgcagTGATCATGTTCTTGATATCTTGGTCATTCACTGTGGTTGCCATTGCACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttattacaaagccttgttgagtttttaaattattattttttctattcttgcagTGATCATGTTCTTGATATCTTGGTCATTCACTGTGGTTGCCATTGCACTTGCAAGTCTTATATACAAATACGTTGGCCTAAAAGGAAAGGCTGGGGACTG
ttattttttctattct CT-rich tract
ttgttgagtttttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaaattttcaaatactcacggagaaagtgtctttcccagtctacctatgtagtccattcctatagaaattctgatttgaactaccacgtggcttcttatctcacctgaatcctgagatgtcttattacaaagccttgttgagtttttaaattattattttttctattcttgcagTGATCATGTTCTTGATATCTTGGTCATTCACTGTGGTTGCCATTGCACTTGCAAGTCTTATATACAAATACGTTGGCCTAAAAGGAAAGGCTGGGGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA