1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatatatataagcttacatgctcgtgatcatcatccctggattgaataacaaatcgcccttttgcacatttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG
species | Arabidopsis thaliana |
transcript | AT1G23310.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGAEST: gi|125225261|gb|EL239346.1|EL239346
genomic: CCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGA
EST: TCCTCCAAAGCCTGGAGACATTTCAATAATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCEST: gi|124847314|gb|EH931751.1|EH931751
genomic: TCCTCCAAAGCCTGGAGACATTTCA-TA-TGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTC
EST: ATTCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGEST: gi|124710790|gb|EH802192.1|EH802192
genomic: A-TCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGEST: gi|125104424|gb|EL158503.1|EL158503
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTEST: gi|124819787|gb|EH904653.1|EH904653
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTT
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGEST: gi|124735985|gb|EH827387.1|EH827387
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAG
EST: TTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|125120543|gb|EL168204.1|EL168204
genomic: TTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: TATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|124948016|gb|EL023811.1|EL023811
genomic: TATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGGATTCTTGAATCTTTGAGAAEST: gi|124792413|gb|EH882092.1|EH882092
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGG-ATTCTTGAATCTTTGAGAA
EST: ATCCTCCAAAGCCTGGAGACATTTCATATGACCAAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATEST: gi|125149311|gb|EL182537.1|EL182537
genomic: ATCCTCCAAAGCCTGGAGACATTTCATATGACCA-GTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAAT
EST: ATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTTGAGAAGAAGAGCAAGGCTCATGACAGATGEST: gi|86074126|gb|DR369883.1|DR369883
genomic: ATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTT-GAGAAGAAGAGCAAGGCTCATGACAGATG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|125275047|gb|EL289132.1|EL289132
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: TTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGAACAGATGEST: gi|86074135|gb|DR369892.1|DR369892
genomic: TTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGA-CAGATG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|125321534|gb|EL335619.1|EL335619
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: TTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|125302144|gb|EL316229.1|EL316229
genomic: TTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: TCCAAAGCCTGGAGACATTTCATATGTACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGAEST: gi|124810613|gb|EH895479.1|EH895479
genomic: TCCAAAGCCTGGAGACATTTCATATG-ACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGA
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACEST: gi|125178606|gb|EL196951.1|EL196951
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGG-ATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGAC
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGEST: gi|125250015|gb|EL264100.1|EL264100
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAG
EST: TTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|124885935|gb|EH964837.1|EH964837
genomic: TTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: GACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|125210457|gb|EL225411.1|EL225411
genomic: GACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: TATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|125194550|gb|EL209504.1|EL209504
genomic: TATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGEST: gi|124979100|gb|EL052195.1|EL052195
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAG
EST: TTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGEST: gi|124948592|gb|EL024328.1|EL024328
genomic: TTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGEST: gi|125199814|gb|EL214768.1|EL214768
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAG
EST: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAG CAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCA
genomic: AATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGgtatatatat ... atttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCA
cgtgatcatcatccctggattgaataacaaatcgcccttttgcacatttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG
gaataac putative branch site (score: 2)
catttcttt putative PPT
attgaataacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatataagcttacatgctcgtgatcatcatccctggattgaataacaaatcgcccttttgcacatttctttagCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC