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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgtttctttcttttatgattttttaagaatagggacaatcccattgtctgtcctgaaacttggttttaattttaatgcaaagtaacgttcttgttctatactatttcactgcagAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCACTGGACCGTGAAAAGATTATACATTG

Basic information

species Arabidopsis thaliana
transcript AT1G20410.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G20410.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv18s0001g00500.t01 (Vitis vinifera), 3'ss of exon 11
gtgagtcgtttctttcttttatgattttttaagaatagggacaatcccattgtctgtcctgaaacttggttttaattttaatgcaaagtaacgttcttgttctatactatttcactgcagAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCACTGGACCGTGAAAAGATTATACATTG
        ||| ||| ||||  |  |||||  |   ||   || ||| | ||   ||  ||    ||  | |||||   |   |   || || |  || || | ||||       |||||||||| |||||||  || ||| |||| ||||||||||||||||||||| | || ||||||||||||||||||||
------attttatttgttttgcggctttttctggccagc--cattcctagtg---gttttg----tttttattaatcgaaggtctttgtcacttgattcttttgtacttg-----tgcagAAAATTTTGCAGAGAACTCCAATAAGGGTGCTTCACCGACGAAGTCCATTAGAACGTGAAAAGATTATACATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttttaattttaatgcaaagtaacgttcttgttctatactatttcactgcagAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCACTGGACCGTGAAAAGATTATACATTG
                    aagtaac  putative branch site (score: 2)
                                         ctatttc  putative PPT
     tttaattttaatgcaa  TA-rich tract